R: Options Settings

options {base}

R Documentation

Options Settings

Description

options allows the user to set and examine a variety of global “options” which affect the way in which R computes and displays its results.

Usage

options(...)
getOption(x)
.Options

Arguments

`...`	any options can be defined, using `name = value`. However, only the ones below are used in “base R”. Further, `options('name') == options()['name']`, see the example.
`prompt`	a string, used for R's prompt; should usually end in a blank (`" "`).
`continue`	a string setting the prompt used for lines which continue over one line.
`width`	controls the number of characters on a line. You may want to change this if you re-size the window that R is running in. Valid values are 10...10000 with default normally 80. (The valid values are in file ‘Print.h’ and can be changed by re-compiling R.)
`digits`	controls the number of digits to print when printing numeric values. It is a suggestion only. Valid values are 1...22 with default 7.
`editor`	sets the default text editor, e.g., for `edit`. Set from the environment variable `VISUAL` on UNIX.
`pager`	the (stand-alone) program used for displaying ASCII files on R's console. Defaults to ‘\$R\_HOME/bin/pager’.
`browser`	default HTML browser used by `help.start()` on UNIX, or a non-default browser on Windows.
`mailer`	default mailer used by `bug.report()`. can be `"none"`.
`contrasts`	the default `contrasts` used in model fitting such as with `aov` or `lm`. A character vector of length two, the first giving the function to be used with unordered factors and the second the function to be used with ordered factors.
`expressions`	sets a limit on the number of nested expressions that will be evaluated. This is especially important on the Macintosh since stack overflow is likely if this is set too high. Valid values are 25...100000 with default 500.
`keep.source`	When `TRUE`, the source code for functions (newly defined or loaded) is stored in their `"source"` attribute (see `attr`) allowing comments to be kept in the right places. The default is `interactive()`, i.e., `TRUE` for interactive use.
`keep.source.pkgs`	As for `keep.source`, for functions in packages loaded by `library` or `require`. Defaults to `FALSE` unless the environment variable `R_KEEP_PKG_SOURCE` is set to `yes`.
`na.action`	the name of a function for treating missing values (`NA`'s) for certain situations.
`papersize`	the default paper format used by `postscript`; set by environment variable `R_PAPERSIZE` when R is started and defaulting to `"a4"` if that is unset or invalid.
`printcmd`	the command used by `postscript` for printing; set by environment variable `R_PRINTCMD` when R is started. This should be a command that expects either input to be piped to ‘stdin’ or to be given a single filename argument.
`latexcmd`, `dvipscmd`	character strings giving commands to be used in off-line printing of help pages.
`show.signif.stars`, `show.coef.Pvalues`	logical, affecting P value printing, see `print.coefmat`.
`ts.eps`	the relative tolerance for certain time series (`ts`) computations.
`error`	either a function or an expression governing the handling of non-catastrophic errors such as those generated by `stop` as well as by signals and internally detected errors. If the option is a function, a call to that function, with no arguments, is generated as the expression. The default value is `NULL`: see `stop` for the behaviour in that case. The function `dump.frames` provides one alternative that allows post-mortem debugging.
`show.error.messages`	a logical. Should error messages be printed? Intended for use with `try` or a user-installed error handler.
`warn`	sets the handling of warning messages. If `warn` is negative all warnings are ignored. If `warn` is zero (the default) warnings are stored until the top–level function returns. If fewer than 10 warnings were signalled they will be printed otherwise a message saying how many (max 50) were signalled. A top–level variable called `last.warning` is created and can be viewed through the function `warnings`. If `warn` is one, warnings are printed as they occur. If `warn` is two or larger all warnings are turned into errors.
`check.bounds`	logical, defaulting to `FALSE`. If true, a warning is produced whenever a “generalized vector” (atomic or `list`) is extended, by something like `x <- 1:3; x[5] <- 6`.
`echo`	logical. Only used in non-interactive mode, when it controls whether input is echoed. Command-line option `--slave` sets this initially to `FALSE`.
`verbose`	logical. Should R report extra information on progress? Set to `TRUE` by the command-line option `--verbose`.
`device`	a character string giving the default device for that session. This defaults to the normal screen device (e.g. `x11`, `windows` or `gtk`) for an interactive session, and `postscript` in batch use or if a screen is not available.
`X11colortype`	The default colour type for `X11` devices.
`CRAN`	The URL of the preferred CRAN node for use by `update.packages`. Defaults to http://cran.r-project.org.
`download.file.method`	Method to be used for `download.file`. Currently download methods `"internal"`, `"wget"` and `"lynx"` are available. There is no default for this option, when `method = "auto"` is chosen: see `download.file`.
`unzip`	the command used for unzipping help files. Defaults to the value of `R\_UNZIPCMD`, which is set in ‘etc/Renviron’ if an `unzip` command was found during configuration.
`de.cellwidth`	integer: the cell widths (number of characters) to be used in the data editor `dataentry`. If this is unset, 0, negative or `NA`, variable cell widths are used.
`encoding`	An integer vector of length 256 holding an input encoding. Defaults to `native.enc` (= `0:255`). See `connections`.
`timeout`	integer. The timeout for Internet operations, in seconds. Default 60 seconds.
`internet.info`	The minimum level of information to be printed on url downloads etc. Default is 2, for failure causes. Set to 1 or 0 to get more information.
`x`	a character string holding one of the above option names.

Details

Invoking options() with no arguments returns a list with the current values of the options. Note that not all options listed above are set initially. To access the value of a single option, one should use getOption("width"), e.g., rather than options("width") which is a list of length one.

.Options also always contains the options() list, for S compatibility. You must use it “read only” however.

The default settings of some of these options are

`prompt`	`"> "`	`continue`	`"+ "`
`width`	`80`	`digits`	`7`
`expressions`	`500`	`keep.source`	`TRUE`
`show.signif.stars`	`TRUE`	`show.coef.Pvalues`	`TRUE`
`na.action`	`na.omit`	`ts.eps`	`1e-5`
`error`	`NULL`	`warn`	`0`
`echo`	`TRUE`	`verbose`	`FALSE`

Others are set from environment variables or are platform-dependent.

Value

A list (in any case) with the previous values of the options changed, or all options when no arguments were given.

Examples

options() # printing all current options
op <- options(); str(op) # nicer printing

# .Options is the same:
all(sapply(1:length(op), function(i) all(.Options[[i]] == op[[i]])))

options('width')[[1]] == options()$width # the latter needs more memory
options(digits=20)
pi

# set the editor, and save previous value
old.o <- options(editor="nedit")
old.o

options(check.bounds = TRUE)
x <- NULL; x[4] <- "yes" # gives a warning

options(op)     # reset (all) initial options
options('digits')

## Not run: ## set contrast handling to be like S
options(contrasts=c("contr.helmert", "contr.poly"))

## End(Not run)
## Not run: ## on error, terminate the R session with error status 66
options(error=quote(q("no", status=66, runLast=FALSE)))
stop("test it")

## End(Not run)
## Not run: ## set an error action for debugging: see ?debugger.
options(error=quote(dump.frames()))
## A possible setting for non-interactive sessions
options(error=quote({dump.frames(to.file=TRUE); q()}))

## End(Not run)

[Package base version 1.5.0 ]